Matthias K. Gobbert

Publications

Reprints and Preprints

I have tried to provide reprints or preprints and links to the publishers' web services for many of my papers below. If you are interested in reprints or preprints of those or other papers and the links do not work for you, do not hesitate to contact me at gobbert@umbc.edu. Thank you for your interest. In the following list, student co-authors are indicated by superscripts, with U for an undergraduate and G for a graduate student.

Other Products

Articles in Peer-Reviewed Journals

  1. Zhuoran JiangG, Jerimy C. Polf, Carlos A. Barajas, Matthias K. Gobbert, and Lei Ren. A Feasibility Study of Enhanced Prompt Gamma Imaging for Range Verification in Proton Therapy using Deep Learning. Physics in Medicine and Biology, vol. 68, no. 7, article 075001, 2023. Link to IOP Science for this article and reprint in PDF-format.
  2. Carlos A. BarajasG, Matthias K. Gobbert, and Jerimy C. Polf. Deep Residual Fully Connected Neural Network Classification of Compton Camera Based Prompt Gamma Imaging for Proton Radiotherapy. Frontiers in Physics, vol. 11, article 903929, 2023. Link to frontiersin.org for this article and reprint in PDF-format.
  3. Jerimy C. Polf, Carlos A. BarajasG, Stephen W. Peterson, Dennis S. Mackin, Sam Beddar, Lei Ren, and Matthias K. Gobbert. Applications of Machine Learning to Improve the Clinical Viability of Compton Camera Based in vivo Range Verification in Proton Radiotherapy. Frontiers in Physics, vol. 10, article 838273, 2022. Link to frontiersin.org for this article and reprint in PDF-format.
  4. Jonathan N. BasalygaU, Carlos A. BarajasG, Matthias K. Gobbert, and Jianwu Wang. Performance Benchmarking of Parallel Hyperparameter Tuning for Deep Learning based Tornado Predictions. Big Data Research, vol. 25, no. 100212, 2021. Link to Elsevier's ScienceDirect Service for this article and reprint in PDF-format.
  5. Lai WangG, Matthias K. Gobbert, and Meilin Yu. A Dynamically Load-Balanced Parallel p-Adaptive Implicit High-Order Flux Reconstruction Method for Under-Resolved Turbulence Simulation. Journal of Computational Physics, vol. 417, no. 109581, 2020. Link to Elsevier's ScienceDirect Service for this article and reprint in PDF-format.
  6. Gerson C. KroizU, Carlos BarajasG, Matthias K. Gobbert, and Bradford E. Peercy. Linkages of Calcium Induced Calcium Release in a Cardiomyocyte Simulated by a System of Seven Coupled Partial Differential Equations. Involve: A Journal of Mathematics, vol. 13, no. 3, pp. 399-424, 2020. Link to this article at MSP and preprint in PDF-format.
  7. Carlos BarajasG, Matthias K. Gobbert, Gerson C. KroizU, and Bradford E. Peercy. Challenges and Opportunities for the Simulation of Calcium Waves on Modern Multi-Core and Many-Core Parallel Computing Platforms. International Journal for Numerical Methods in Biomedical Engineering, 2019;e3244. Link to this article at the Wiley Online Library and reprint in PDF-format.
  8. F. Avraham Dilmanian, Sunil Krishnan, William E. McLaughlin, Brendan Lukaniec, Jameson T. Baker, Sandeep Ailawadi, Kara N. Hirsch, Renee F. Cattell, Rahul Roy, Joel Helfer, Kurt Kruger, Karl Spuhler, Yulun He, Ramesh Tailor, April Vassantachart, Dakota C. Heaney, Pat Zanzonico, Matthias K. Gobbert, Jonathan S. GrafG, Jessica R. Nassimi, Nasrin N. Fatemi, Mark E. Schweitzer, Lev Bangiyev, and John G. Eley. Merging Orthovoltage X-Ray Minibeams Spare the Proximal Tissues while Producing a Solid Beam at the Target. Scientific Reports, vol. 9, article number 1198, 2019. Link to Nature's webpage for this article and reprint in PDF-format.
  9. Anna M. Kearns, John F. Malloy, Matthias K. Gobbert, Aude Thierry, Walter Boles, Leo Joseph, Amy C. Driskell, and Kevin E. Omland. Nuclear Introns Help Unravel the Diversification History of the Australo-Pacific Petroica Robins. Molecular Phylogenetics and Evolution, vol. 131, pp. 48-54, 2019. Link to Elsevier's ScienceDirect Service for this article and reprint in PDF-format.
  10. James Della-GiustinaU, Johnlemuel CasilagU, Elizabeth GregorioU, Aniebet JacobU, Carlos BarajasG, Matthias K. Gobbert, Dennis S. Mackin, and Jerimy Polf. Speedup Potential for Reconstruction Techniques for Prompt Gamma Imaging During Proton Radiotherapy. American Journal on Undergraduate Research, vol. 14, iss. 4, pp. 23-37, 2018. Link to this article online and reprint in PDF-format.
  11. Jonathan S. GrafG, Matthias K. Gobbert, and Samuel Khuvis. Long-Time Simulations with Complex Code using Multiple Nodes of Intel Xeon Phi Knights Landing. Journal of Computational and Applied Mathematics, vol. 337, pp. 18-36, 2018. Link to Elsevier's ScienceDirect Service for this article and preprint in PDF-format.
  12. Sai K. PopuriG, Andrew M. Raim, Nagaraj K. Neerchal, and Matthias K. Gobbert. Parallelizing Computation of Expected Values in Recombinant Binomial Trees. Journal of Statistical Computation and Simulation, vol. 88, iss. 4, pp. 657-674, 2018. Link to this article online and preprint in PDF-format.
  13. Kristen DeetzU, Nygel FosterU, Darius LeftwichU, Chad MeyerU, Shalin PatelU, Carlos BarajasG, Matthias K. Gobbert, and Zana Coulibaly. Examining the Electrical Excitation, Calcium Signaling, and Mechanical Contraction Cycle in a Heart Cell. Spora: A Journal of Biomathematics, vol. 3, pp. 66-85, 2017. Link to this article online and preprint in PDF-format.
  14. Kallista AngeloffU, Carlos BarajasU, Alexander D. MiddletonU, Uchenna OsiaU, Jonathan S. GrafG, Matthias K. Gobbert, and Zana Coulibaly. Examining the Effect of Introducing a Link from Electrical Excitation to Calcium Dynamics in a Cardiomyocyte. Spora: A Journal of Biomathematics, vol. 2, pp. 49-73, 2016. Link to this article online and preprint in PDF-format.
  15. Samuel KhuvisG, Matthias K. Gobbert, and Bradford E. Peercy. Time-Stepping Techniques to Enable the Simulation of Bursting Behavior in a Physiologically Realistic Computational Islet. Mathematical Biosciences, vol. 263, pp. 1-17, 2015. Link to this article online and reprint in PDF-format.
  16. Zana A. CoulibalyG, Bradford E. Peercy, and Matthias K. Gobbert. Insight into Spontaneous Recurrent Calcium Waves in a 3-D Cardiac Cell Based on Analysis of a 1-D Deterministic Model. International Journal of Computer Mathematics, vol. 92, no. 3, pp. 591-607, 2015. Link to this article at Taylor and Francis online and preprint in PDF-format.
  17. Jonas SchäferG, Xuan HuangG, Stefan Kopecz, Philipp Birken, Matthias K. Gobbert, and Andreas Meister. A Memory-Efficient Finite Volume Method for Advection-Diffusion-Reaction Systems with Non-Smooth Sources. Numerical Methods for Partial Differential Equations, vol. 31, no. 1, pp. 143-167, 2015. Link to this article at the Wiley Online Library and preprint in PDF-format.
  18. Gemma GearhartU, Shuai JiangU, Thomas J. MayU, Jane PanU, Samuel KhuvisG, Matthias K. Gobbert, Bradford E. Peercy, and Arthur Sherman. Dynamics of Computational Islet Simulations: Islets with Majority Mutated Open KATP Channels Retain Bursting. Letters in Biomathematics, vol. 1, no. 1, 13 pages, 2014. [Invited paper for the inaugural issue of this journal, published originally in the Proceedings of the Sixth Symposium on BEER 2013.] Direct link to the abstract and preprint in PDF-format.
  19. Andrew M. RaimG, Matthias K. Gobbert, Nagaraj K. Neerchal, and Jorge G. Morel. Maximum Likelihood Estimation of the Random-Clumped Multinomial Model as Prototype Problem for Large-Scale Statistical Computing. Journal of Statistical Computation and Simulation, vol. 83, no. 12, pp. 2178-2194, 2013. Link to this article at Taylor and Francis online and preprint in PDF-format.
  20. Thomas I. Seidman, Matthias K. Gobbert, David W. TrottG, and Martin Kružík. Finite Element Approximation for Time-Dependent Diffusion with Measure-Valued Source. Numerische Mathematik, vol. 122, no. 4, pp. 709-723, 2012. Link to this article at SpringerLink and preprint in PDF-format.
  21. Alen AlexanderianG, Matthias K. Gobbert, K. Renee Fister, Holly Gaff, Suzanne Lenhart, and Elsa Schaefer. An Age-Structured Model for the Spread of Epidemic Cholera: Analysis and Simulation. Nonlinear Analysis: Real World Applications, vol. 12, no. 6, pp. 3483-3498, 2011. Link to Elsevier's ScienceDirect Service for this article and preprint in PDF-format.
  22. Michael MuscedereG and Matthias K. Gobbert. Parameter Study of a Reaction-Diffusion System Near the Reactant Coefficient Asymptotic Limit. Dynamics of Continuous, Discrete and Impulsive Systems Series A Supplement, pp. 29-36, 2009. Preprint in PDF-format.
  23. Shiming YangG and Matthias K. Gobbert. The Optimal Relaxation Parameter for the SOR Method Applied to the Poisson Equation in Any Space Dimensions. Applied Mathematics Letters, vol. 22, pp. 325-331, 2009. Link to Elsevier's ScienceDirect Service for this article and preprint in PDF-format.
  24. Matthias K. Gobbert. Long-Time Simulations on High Resolution Meshes to Model Calcium Waves in a Heart Cell. SIAM Journal on Scientific Computing, vol. 30, no. 6, pp. 2922-2947, 2008. [Special issue on Computational Science & Engineering.] Direct link to the abstract and reprint in PDF-format.
  25. Matthias K. Gobbert and Timothy S. Cale. Modeling Multiscale Effects on Transients During Chemical Vapor Deposition. Surface and Coatings Technology, vol. 201, no. 22-23, pp. 8830-8837, 2007. Link to Elsevier's ScienceDirect Service for this article.
  26. Timothy S. Cale, Max O. BloomfieldG, and Matthias K. Gobbert. Two Deterministic Approaches to Topography Evolution. Surface and Coatings Technology, vol. 201, no. 22-23, pp. 8873-8877, 2007. Link to Elsevier's ScienceDirect Service for this article.
  27. Matthias K. Gobbert, Samuel G. WebsterG, and Timothy S. Cale. A Galerkin Method for the Simulation of the Transient 2-D/2-D and 3-D/3-D Linear Boltzmann Equation. Journal of Scientific Computing, vol. 30, no. 2, pp. 237-273, 2007. Link to this article at SpringerLink and reprint in PDF-format.
  28. Matthias K. Gobbert and Timothy S. Cale. Effect of the Knudsen Number on Transient Times During Chemical Vapor Deposition. International Journal for Multiscale Computational Engineering, vol. 4, no. 3, pp. 319-335, 2006. Preprint in PDF-format.
  29. Matthias K. Gobbert and Timothy S. Cale. A Kinetic Transport and Reaction Model and Simulator for Rarefied Gas Flow in the Transition Regime. Journal of Computational Physics, vol. 213, pp. 591-612, 2006. Link to Elsevier's ScienceDirect Service for this article and reprint in PDF-format.
  30. Ana Maria SoaneG, Matthias K. Gobbert, and Thomas I. Seidman. Numerical Exploration of a System of Reaction-Diffusion Equations with Internal and Transient Layers. Nonlinear Analysis: Real World Applications, vol. 6, no. 5, pp. 914-934, 2005. Link to Elsevier's ScienceDirect Service for this article and reprint in PDF-format.
  31. Matthias K. Gobbert. Configuration and Performance of a Beowulf Cluster for Large-Scale Scientific Simulations. Computing in Science and Engineering (CiSE), vol. 7, no. 2, pp. 14-26, March/April 2005. Link to IEEE's Xplore site for this article and reprint in PDF-format.
  32. Alexander L. HanhartG, Matthias K. Gobbert, and Leighton T. Izu. A Memory-Efficient Finite Element Method for Systems of Reaction-Diffusion Equations with Non-Smooth Forcing. Journal of Computational and Applied Mathematics, vol. 169, no. 2, pp. 431-458, 2004. Link to Elsevier's ScienceDirect Service for this article and reprint in PDF-format.
  33. Matthias K. Gobbert and Christian Ringhofer. A Homogenization Technique for the Boltzmann Equation for Low Pressure Chemical Vapor Deposition. SIAM Journal on Applied Mathematics, vol. 64, no. 1, pp. 196-215, 2003. Link to SIAM epubs for this article and reprint in PDF-format.
  34. Matthias K. Gobbert, Vinay Prasad, and Timothy S. Cale. Predictive Modeling of Atomic Layer Deposition on the Feature Scale. Thin Solid Films, vol. 410, pp. 129-141, 2002. Link to Elsevier's ScienceDirect Service for this article and reprint in PDF-format.
  35. Matthias K. Gobbert, Vinay Prasad, and Timothy S. Cale. Modeling and Simulation of Atomic Layer Deposition at the Feature Scale. Journal of Vacuum Science & Technology B, vol. 20, no. 3, pp. 1031-1043, 2002. Link to this article at the American Vacuum Society and reprint in PDF-format.
  36. Matthias K. Gobbert, Samuel G. WebsterG, and Timothy S. Cale. Transient Adsorption and Desorption in Micrometer Scale Features. Journal of The Electrochemical Society, vol. 149, no. 8, pp. G461-G473, 2002. Link to this article at The Electrochemical Society and reprint in PDF-format.
  37. Timothy S. Cale, Max O. BloomfieldG, David F. Richards, Kenneth E. Jansen, and Matthias K. Gobbert. Integrated Multiscale Process Simulation. Computational Materials Science, vol. 23, pp. 3-14, 2002. Link to Elsevier's ScienceDirect Service for this article and reprint in PDF-format.
  38. Matthias K. Gobbert and Andreas Prohl. A Comparison of Classical and New Finite Element Methods for the Computation of Laminate Microstructure. Applied Numerical Mathematics, vol. 36, pp. 155-178, 2001. Link to Elsevier's ScienceDirect Service for this article and reprint in PDF-format.
  39. Tushar P. Merchant, Matthias K. Gobbert, Timothy S. Cale, and Leonard J. Borucki. Multiple Scale Integrated Modeling of Deposition Processes. Thin Solid Films, vol. 365, no. 2, pp. 368-375, 2000. Link to Elsevier's ScienceDirect Service for this article and reprint in PDF-format.
  40. Matthias K. Gobbert and Andreas Prohl. A Discontinuous Finite Element Method for Solving a Multiwell Problem. SIAM Journal on Numerical Analysis, vol. 37, no. 1, pp. 246-268, 1999. Link to SIAM epubs for this article and reprint in PDF-format.
  41. Matthias K. Gobbert, Timothy S. Cale, and Christian A. Ringhofer. The Combination of Equipment Scale and Feature Scale Models for Chemical Vapor Deposition Via a Homogenization Technique. VLSI Design, vol. 6, nos. 1-4, pp. 399-403, 1998.
  42. Matthias K. Gobbert and Christian A. Ringhofer. An Asymptotic Analysis for a Model of Chemical Vapor Deposition on a Microstructured Surface. SIAM Journal on Applied Mathematics, vol. 58, no. 3, pp. 737-752, 1998. Link to SIAM epubs for this article and reprint in PDF-format.
  43. Matthias K. Gobbert, Tushar P. Merchant, Leonard J. Borucki, and Timothy S. Cale. A Multiscale Simulator for Low Pressure Chemical Vapor Deposition. Journal of The Electrochemical Society, vol. 144, no. 11, pp. 3945-3951, 1997.
  44. Matthias K. Gobbert, Christian A. Ringhofer, and Timothy S. Cale. Mesoscopic Scale Modeling of Microloading During Low Pressure Chemical Vapor Deposition. Journal of The Electrochemical Society, vol. 143, no. 8, pp. 2624-2631, 1996.

Articles in Refereed Proceedings

  1. Matthias K. Gobbert and Jianwu Wang. Team-Based Online Learning in Multidisciplinary Research and Instruction. In: The 18th International Conference on Frontiers in Education: Computer Science and Computer Engineering (FECS'22), in press (2022). Preprint in PDF-format.
  2. Matthias K. Gobbert and Jianwu Wang. Lessons from an Online Multidisciplinary Undergraduate Summer Research Program. In: The 17th International Conference on Frontiers in Education: Computer Science and Computer Engineering (FECS'21), in press (2021). Preprint in PDF-format.
  3. Gerson C. KroizU, Carlos A. BarajasG, Matthias K. Gobbert, and Jerimy C. Polf. Exploring Deep Learning to Improve Compton Camera Based Prompt Gamma Image Reconstruction for Proton Radiotherapy. In: The 17th International Conference on Data Science (ICDATA'21), in press (2021). Preprint in PDF-format.
  4. Ruth ObeU, Brandt KaufmannU, Kaelen BairdU, Sam KadelU, Yasmin SoltaniU, Mostafa ChamG, Matthias K. Gobbert, Carlos A. Barajas, Zhuoran JiangG, Vijay R. Sharma, Lei Ren, Stephen W. Peterson, and Jerimy C. Polf. Accelerating Real-Time Imaging for Radiotherapy: Leveraging Multi-GPU Training with PyTorch. In: 2023 International Conference on Machine Learning and Applications (ICMLA 2023), pages 1727-1734, 2023. Link to IEEE's Xplore site for this article and reprint in PDF-format.
  5. Joseph ClarkU, Anaise GaillardU, Justin KoeU, Nithya NavarathnaU, Daniel J. KellyG, Matthias K. Gobbert, Carlos A. Barajas, and Jerimy C. Polf. Multi-Layer Recurrent Neural Networks for the Classification of Compton Camera Based Imaging Data for Proton Beam Cancer Treatment. In: 9th IEEE/ACM International Conference on Big Data Computing, Applications and Technologies (BDCAT 2022), pages 213-222, 2022. Reprint in PDF-format.
  6. Carlos A. BarajasG, Gerson C. KroizU, Matthias K. Gobbert, and Jerimy C. Polf. Classification of Compton Camera Based Prompt Gamma Imaging for Proton Radiotherapy by Random Forests. In: The 2021 International Conference on Computational Science and Computational Intelligence (CSCI 2021), pages 308-311, 2021. Preprint in PDF-format.
  7. Sokhna A. YorkU, Alina M. AliU, David C. Lashbrooke Jr.U, Rodrigo Yepez-LopezU, Carlos A. BarajasG, Matthias K. Gobbert, and Jerimy C. Polf. Promising Hyperparameter Configurations for Deep Fully Connected Neural Networks to Improve Image Reconstruction in Proton Radiotherapy. In: 2021 IEEE International Conference on Big Data (Big Data 2021), pages 5648-5657, 2021. Reprint in PDF-format.
  8. Jianwu Wang, Matthias K. Gobbert, Zhibo Zhang, and Aryya Gangopadhyay. Team-Based Online Multidisciplinary Education on Big Data + High-Performance Computing + Atmospheric Sciences. In: Hamid R. Arabnia, Leonidas Deligiannidis, Fernando G. Tinetti, and Quoc-Nam Tran, editors, Advances in Software Engineering, Education, and e-Learning, Transactions on Computational Science and Computational Intelligence, Springer, pp. 43-54, 2021. Link to this article at SpringerLink and preprint in PDF-format.
  9. Carlos A. BarajasG, Matthias K. Gobbert, and Jianwu Wang. Tornado Storm Data Synthesization using Deep Convolutional Generative Adversarial Network (DCGAN). In: Robert Stahlbock, Gary M. Weiss, Mahmoud Abou-Nasr, Cheng-Ying Yang, Hamid R. Arabnia, and Leonidas Deligiannidis, editors, Advances in Data Science and Information Engineering, Transactions on Computational Science and Computational Intelligence, Springer, pp. 383-388, 2021. Link to this article at SpringerLink and Preprint in PDF-format.
  10. Reetam MajumderG, Matthias K. Gobbert, and Nagaraj K. Neerchal. A Modified Minibatch Sampling Method for Parameter Estimation in Hidden Markov Models using Stochastic Variational Bayes. In: Proceedings in Applied Mathematics and Mechanics (PAMM), vol. 21, no. 1, 2 pages, 2021. Link to this article at the Wiley Online Library and reprint in PDF-format.
  11. Carlos A. BarajasG, Gerson C. KroizU, Matthias K. Gobbert, and Jerimy C. Polf. Using Deep Learning to Enhance Compton Camera Based Prompt Gamma Image Reconstruction Data for Proton Radiotherapy. In: Proceedings in Applied Mathematics and Mechanics (PAMM), vol. 21, no. 1, 2 pages, 2021. Link to this article at the Wiley Online Library and reprint in PDF-format.
  12. Brice Coffer, Michaela Kubacki, Yixin Wen, Ting Zhang, Carlos A. BarajasG, and Matthias K. Gobbert. Machine Learning with Feature Importance Analysis for Tornado Prediction from Environmental Sounding Data. Proceedings in Applied Mathematics and Mechanics (PAMM), vol. 20, no. 1, 2 pages, 2020. Link to this article at the Wiley Online Library and reprint in PDF-format.
  13. Jonathan N. BasalygaU, Carlos A. BarajasG, Matthias K. Gobbert, Paul Maggi, and Jerimy Polf. Deep Learning for Classification of Compton Camera Data in the Reconstruction of Proton Beams in Cancer Treatment. Proceedings in Applied Mathematics and Mechanics (PAMM), vol. 20, no. 1, 2 pages, 2020. Link to this article at the Wiley Online Library and reprint in PDF-format.
  14. Gerson C. KroizU, Reetam MajumderG, Matthias K.Gobbert, Nagaraj K. Neerchal, Kel Markert, and Amita Mehta. Daily Precipitation Generation using a Hidden Markov Model with Correlated Emissions for the Potomac River Basin. Proceedings in Applied Mathematics and Mechanics (PAMM), vol. 20, no. 1, 2 pages, 2020. Link to this article at the Wiley Online Library and reprint in PDF-format.
  15. Carlos A. BarajasG, Matthias K. Gobbert, and Jianwu Wang. Performance Benchmarking of Data Augmentation and Deep Learning for Tornado Prediction. In: 2019 IEEE International Conference on Big Data (Big Data 2019), pages 3607-3615, 2019. Preprint in PDF-format.
  16. Carlos BarajasG, Stefan Kopecz, Andreas Meister, Bradford E. Peercy, and Matthias K. Gobbert. Simulation of Calcium Waves in a Heart Cell on Modern Multi-Core Parallel Computing Platforms. Proceedings in Applied Mathematics and Mechanics (PAMM), vol. 19, 2 pages, 2019. Link to this article at the Wiley Online Library and reprint in PDF-format.
  17. Carlos BarajasG, Pei GuoG, Lipi MukherjeeG, Susan Hoban, Jianwu Wang, Daeho Jin, Aryya Gangopadhyay, and Matthias Gobbert. Benchmarking Parallel Implementations of K-Means Cloud Type Clustering from Satellite Data. In: C. Zheng and J. Zhan, editors, Benchmarking, Measuring, and Optimizing. Bench 2018, Lecture Notes in Computer Science, vol. 11459, pp. 248-260, Springer-Verlag, 2019. Link to this article at SpringerLink and reprint in PDF-format.
  18. Stefan Kopecz, Andreas Meister, Bradford E. Peercy, and Matthias K. Gobbert. Parameter Identification for Calcium Release in a Heart Cell with Modified Patankar-Runge-Kutta Schemes. Proceedings in Applied Mathematics and Mechanics (PAMM), vol. 18, 2 pages, 2018. Link to this article at the Wiley Online Library and reprint in PDF-format.
  19. James Della-GiustinaU, Carlos BarajasG, Matthias K. Gobbert, Dennis S. Mackin, and Jerimy Polf. Hybrid MPI+OpenMP Parallelization of Image Reconstruction in Proton Beam Therapy on Multi-Core and Many-Core Processors. In: Proceedings of the High Performance Computing Symposium (HPC '18), Society for Computer Simulation International (SCS), article 11, pages 1-11, 2018. Link to this article online and reprint in PDF-format.
  20. Jianwu Wang, Matthias K. Gobbert, Zhibo Zhang, Aryya Gangopadhyay, and Glenn G. Page. Multidisciplinary Education on Big Data + HPC + Atmospheric Sciences. In: Proceedings of the Workshop on Education for High-Performance Computing (EduHPC-17), 8 pages, 2017. Link to the article online and preprint in PDF-format.
  21. Sai K. PopuriG, Ross Flieger-AllisonU, Lois MillerU, Danielle SykesU, Pablo ValleU, Nagaraj K. Neerchal, Kofi P. Adragni, Amita Mehta, and Matthias K. Gobbert. Spatio-Temporal Analysis of Precipitation Data via a Sufficient Dimension Reduction in Parallel. In: JSM Proceedings, Section on Statistics and the Environment, American Statistical Association, pp. 3805-3815, 2016. Preprint in PDF-format.
  22. Kourosh M. KalayehG, Jonathan S. GrafG, and Matthias K. Gobbert. FEM Convergence for PDEs with Point Sources in 2-D and 3-D. In: Proceedings of the COMSOL Conference 2015, Boston, MA, 6 pages, 2015. Reprint in PDF-format.
  23. Matthew W. BrewsterU, Jonathan S. GrafG, Xuan HuangG, Zana CoulibalyG, Matthias K. Gobbert, and Bradford E. Peercy. Calcium Induced Calcium Release with Stochastic Uniform Flux Density in a Heart Cell. In: Saurabh Mittal, Il-Chul Moon, and Eugene Syriani, editors, Proceedings of the Conference on Summer Computer Simulation (SummerSim '15), pp. 1-6, 2015. Preprint in PDF-format.
  24. Xuan HuangG and Matthias K. Gobbert. Long-time Simulation of Calcium Induced Calcium Release In A Heart Cell using Finite Element Method on a Hybrid CPU/GPU Node. In: Proceedings of the Symposium on High Performance Computing (HPC '15), pp. 150-157, 2015. Preprint in PDF-format.
  25. Nil MistryU, Jordan RamseyU, Benjamin WileyU, Jackie YanchuckU, Xuan HuangG, and Matthias K. Gobbert. Throughput Studies on an InfiniBand Interconnect via All-to-All Communications. In: Proceedings of the Symposium on High Performance Computing (HPC '15), pp. 93-99, 2015. Preprint in PDF-format.
  26. Matthias K. Gobbert, Andreas Meister, and Sven WallbaumG. On Unconditionally Positivity Preserving and Conservative Methods for Systems of Advection-Diffusion-Reaction Equations. Proceedings in Applied Mathematics and Mechanics (PAMM), vol. 14, pp. 965-966, 2014. Link to this article at the Wiley Online Library and preprint in PDF-format.
  27. Gemma GearhartU, Shuai JiangU, Thomas J. MayU, Jane PanU, Samuel KhuvisG, Matthias K. Gobbert, Bradford E. Peercy, and Arthur Sherman. Dynamics of Computational Islet Simulations: Islets with Majority Mutated Open KATP Channels Retain Bursting. Proceedings of the Sixth Symposium on Biomathematics and Ecology: Education and Research (BEER) 2013, 13 pages, 2014. Link to the article online and Reprint in PDF-format.
  28. X. HuangG, S. KhuvisG, S. AskarianG, M. K. Gobbert, and B. E. Peercy. Coupled PDEs with Initial Solution from Data in COMSOL 4. In: Jinlan Huang, editor, Proceedings of the COMSOL Conference 2013, Boston, MA, 6 pages, 2013. Reprint in PDF-format.
  29. Yu WangG, Marc Olano, Matthias Gobbert, and Wesley GriffinG. Parallel Computing for Long-Time Simulations of Calcium Waves in a Heart Cell. Proceedings in Applied Mathematics and Mechanics (PAMM), vol. 12, pp. 637-638, 2012. Link to this article at the Wiley Online Library and reprint in PDF-format.
  30. Mattie WhitmoreG, Bradford E. Peercy, Matthew E. Baker, Matthias K. Gobbert, and David W. TrottG. COMSOL Modeling of Groundwater Flow and Pollutant Transport in a Two-Dimensional Geometry With Heterogeneities. In: Yeswanth Rao, editor, Proceedings of the COMSOL Conference 2011, Boston, MA, 6 pages, 2011. Reprint in PDF-format.
  31. David W. TrottG and Matthias K. Gobbert. Finite Element Convergence for Time-Dependent PDEs with a Point Source in COMSOL 4. In: Yeswanth Rao, editor, Proceedings of the COMSOL Conference 2011, Boston, MA, 6 pages, 2011. Reprint in PDF-format.
  32. David W. TrottG and Matthias K. Gobbert. Conducting Finite Element Convergence Studies using COMSOL 4.0. In: Yeswanth Rao, editor, Proceedings of the COMSOL Conference 2010, Boston, MA, 6 pages, 2010. Reprint in PDF-format.
  33. Matthias K. Gobbert, Aaron ChurchillG, Guan WangG, and Thomas I. Seidman. COMSOL Multiphysics for Efficient Solution of a Transient Reaction-Diffusion System with Fast Reaction. In: Yeswanth Rao, editor, Proceedings of the COMSOL Conference 2009, Boston, MA, 7 pages, 2009. Reprint in PDF-format.
  34. Noemi PetraG and Matthias K. Gobbert. Parallel Performance Studies for COMSOL Multiphysics Using Scripting and Batch Processing. In: Yeswanth Rao, editor, Proceedings of the COMSOL Conference 2009, Boston, MA, 6 pages, 2009. Reprint in PDF-format.
  35. Matthias K. Gobbert and Shiming YangG. Numerical Demonstration of Finite Element Convergence for Lagrange Elements in COMSOL Multiphysics. In: Vineet Dravid, editor, Proceedings of the COMSOL Conference 2008, Boston, MA, 6 pages, 2008. Reprint in PDF-format.
  36. Matthias K. Gobbert. A Technique for the Quantitative Assessment of the Solution Quality on Particular Finite Elements in COMSOL Multiphysics. In: Vineet Dravid, editor, Proceedings of the COMSOL Conference 2007, Boston, MA, pp. 267-272, 2007. Reprint in PDF-format.
  37. Matthias K. Gobbert, Mark L. BreitenbachG, and Timothy S. Cale. Cluster Computing for Transient Simulations of the Linear Boltzmann Equation on Irregular Three-Dimensional Domains. In: Vaidy S. Sunderam, Geert Dick van Albada, Peter M. A. Sloot, and Jack J. Dongarra, editors, Computational Science - ICCS 2005, Lecture Notes in Computer Science, vol. 3516, pp. 41-48, Springer-Verlag, 2005.
  38. Timothy S. Cale, Max O. BloomfieldG, David F. Richards, Sofiane SoukaneG, Kenneth E. Jansen, John A. Tichy, and Matthias K. Gobbert. Integrated Multiscale Process Simulation in Microelectronics. In: Naoufel Ben Abdallah, Anton Arnold, Pierre Degond, Irene M. Gamba, Robert T. Glassey, C. David Levermore, and Christian Ringhofer, editors, Dispersive Transport Equations and Multiscale Models, The IMA Volumes in Mathematics and its Applications, vol. 136, pp. 51-76, Springer-Verlag, 2004.
  39. Matthias K. Gobbert and Christian Ringhofer. Mesoscopic Scale Modeling for Chemical Vapor Deposition in Semiconductor Manufacturing. In: Naoufel Ben Abdallah, Anton Arnold, Pierre Degond, Irene M. Gamba, Robert T. Glassey, C. David Levermore, and Christian Ringhofer, editors, Dispersive Transport Equations and Multiscale Models, The IMA Volumes in Mathematics and its Applications, vol. 136, pp. 133-149, Springer-Verlag, 2004.
  40. Kevin P. AllenU and Matthias K. Gobbert. Coarse-Grained Parallel Matrix-Free Solution of a Three-Dimensional Elliptic Prototype Problem. In: Vipin Kumar, Marina L. Gavrilova, Chih Jeng Kenneth Tan, and Pierre L'Ecuyer, editors, Computational Science and Its Applications - ICCSA 2003, Lecture Notes in Computer Science, vol. 2668, pp. 290-299, Springer-Verlag, 2003. Preprint in PDF-format.
  41. Vinay Prasad, Matthias K. Gobbert, Max BloomfieldG, and Timothy S. Cale. Improving Pulse Protocols in Atomic Layer Deposition. In: B. M. Melnick, T. S. Cale, S. Zaima, and T. Ohta, editors, Advanced Metallization Conference 2002, pp. 709-715, Materials Research Society, 2003.
  42. Samuel G. WebsterG, Matthias K. Gobbert, and Timothy S. Cale. Transient 3-D/3-D Transport and Reactant-Wafer Interactions: Adsorption and Desorption. In: P. Timans, E. Gusev, F. Roozeboom, M. Ozturk, and D. L. Kwong, editors, Rapid Thermal and Other Short-Time Processing Technologies III, The Electrochemical Society Proceedings Series, vol. 2002-11, pp. 81-88, 2002.
  43. Vinay Prasad, Matthias K. Gobbert, and Timothy S. Cale. Optimizing Pulse Protocols in Plasma-Enhanced Atomic Layer Deposition. In: G. S. Mathad, M. Yang, R. E. Sah, and M. D. Allendorf, editors, Plasma Processing XIV, The Electrochemical Society Proceedings Series, vol. 2002-17, pp. 25-34, 2002.
  44. Samuel G. WebsterG, Matthias K. Gobbert, Jean-François Remacle, and Timothy S. Cale. Parallel Numerical Solution of the Boltzmann Equation for Atomic Layer Deposition. In: Burkhard Monien and Rainer Feldmann, editors, Euro-Par 2002 Parallel Processing, Lecture Notes in Computer Science, vol. 2400, pp. 452-456, Springer-Verlag, 2002.
  45. Vinay Prasad, Matthias K. Gobbert, and Timothy S. Cale. A Transport and Reaction Model for Atomic Layer Deposition. In: Andrew J. McKerrow, Yosi Shacham-Diamand, Shigeaki Zaima, and Takayuki Ohba, editors, Advanced Metallization Conference 2001, pp. 399-403, Materials Research Society, 2002.
  46. Matthias K. Gobbert, Vinay Prasad, and Timothy S. Cale. A Feature Scale Model for Atomic Layer Deposition. In: T. Wade, editor, Proceedings of the Eighteenth International VLSI Multilevel Interconnection Conference, pp. 413-417, IMIC, 2001.
  47. Matthias K. Gobbert and Timothy S. Cale. A Feature Scale Transport and Reaction Model for Atomic Layer Deposition. In: M. T. Swihart, M. D. Allendorf, and M. Meyyappan, editors, Fundamental Gas-Phase and Surface Chemistry of Vapor-Phase Deposition II, The Electrochemical Society Proceedings Series, vol. 2001-13, pp. 316-323, 2001.
  48. T. S. Cale, T. P. Merchant, L. J. Borucki, M. K. Gobbert, and A. H. Labun. Integrated Multiscale Process Simulator for LPCVD. In: T. Wade, editor, Proceedings of the Seventeenth International VLSI Multilevel Interconnection Conference, pp. 233-242, IMIC, 2000.
  49. Matthias K. Gobbert, Tushar P. Merchant, Leonard J. Borucki, and Timothy S. Cale. Vertical Integration of CVD Process Models. In: Mark D. Allendorf and Claude Bernard, editors, Chemical Vapor Deposition: Proceedings of the Fourteenth International Conference and EUROCVD-11, The Electrochemical Society Proceedings Series, vol. 97-25, pp. 254-261, 1997.
  50. Matthias K. Gobbert, Tushar P. Merchant, Timothy S. Cale, and Leonard J. Borucki. Microloading in LPCVD: an Integrated Simulation Approach. In: Robert Havemann, John Schmitz, Hiroshi Komiyama, and Kazuo Tsubouchi, editors, Advanced Metallization and Interconnect Systems for ULSI Applications in 1996, pp. 511-515, Materials Research Society, 1997.
  51. Matthias K. Gobbert, Timothy S. Cale, and Christian A. Ringhofer. One Approach to Combining Equipment Scale and Feature Scale Models. In: Meyya Meyyappan, Demetre J. Economou, and Stephanie W. Butler, editors, Process Control, Diagnostics, and Modeling in Semiconductor Manufacturing, The Electrochemical Society Proceedings Series, vol. 95-4, pp. 553-563, 1995.

Other Publications

  1. Matthias K. Gobbert. Strong Performance Studies for the 2-D Poisson Equation on the Taki 2021 CPU Cluster. Technical Report HPCF-2023-13, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2023. Reprint in PDF-format.
  2. Kaelen BairdU, Sam KadelU, Brandt KaufmannU, Ruth ObeU, Yasmin SoltaniU, Mostafa ChamG, Matthias K. Gobbert, Carlos A. Barajas, Zhuoran JiangG, Vijay R. Sharma, Lei Ren, Stephen W. Peterson, and Jerimy C. Polf. Enhancing Real-Time Imaging for Radiotherapy: Leveraging Hyperparameter Tuning with PyTorch. Technical Report HPCF-2023-12, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2023. Reprint in PDF-format.
  3. Joseph ClarkU, Anaise GaillardU, Justin KoeU, Nithya NavarathnaU, Daniel J. KellyG, Matthias K. Gobbert, Carlos A. Barajas, and Jerimy C. Polf. Sequence-Based Models for the Classification of Compton Camera Prompt Gamma Imaging Data for Proton Radiotherapy on the GPU Clusters Taki and Ada. Technical Report HPCF-2022-12, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2022. Reprint in PDF-format.
  4. Alina M. AliU, David C. Lashbrooke Jr.U, Rodrigo Yepez-LopezU, Sokhna A. YorkU, Carlos A. BarajasG, Matthias K. Gobbert, and Jerimy C. Polf. Towards Optimal Configurations for Deep Fully Connected Neural Networks to Improve Image Reconstruction in Proton Radiotherapy. Technical Report HPCF-2021-12, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2021. Reprint in PDF-format.
  5. Reetam MajumderG, Matthias K. Gobbert, Amita Mehta, and Nagaraj K. Neerchal. Variational Bayes Estimation of Hidden Markov Models for Daily Precipitation with Semi-Continuous Emissions. Technical Report HPCF-2021-8, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2021. Reprint in PDF-format.
  6. Carlos A. BarajasG, Gerson C. KroizU, Matthias K. Gobbert, and Jerimy C. Polf. Deep Learning Based Classification Methods of Compton Camera Based Prompt Gamma Imaging for Proton Radiotherapy. Technical Report HPCF-2021-1, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2021.
  7. Jonathan N. BasalygaU, Carlos A. BarajasG, Gerson C. KroizU, Matthias K. Gobbert, Paul Maggi, and Jerimy Polf. Improvements to the Deep Learning Classification of Compton Camera based Prompt Gamma Imaging for Proton Radiotherapy. Technical Report HPCF-2020-29, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2020. Reprint in PDF-format.
  8. Carlos A. BarajasG, Matthias K. Gobbert, and Jianwu Wang. Tornado Storm Data Synthesization using Deep Convolutional Generative Adversarial Network (DCGAN): Related Works and Implementation Details. Technical Report HPCF-2020-19, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2020. Reprint in PDF-format.
  9. Brice Coffer, Michaela Kubacki, Yixin Wen, Ting Zhang, Carlos A. BarajasG, and Matthias K. Gobbert. Using Machine Learning Techniques for Supercell Tornado Prediction with Environmental Sounding Data. Technical Report HPCF-2020-18, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2020. Reprint in PDF-format.
  10. Jonathan N. BasalygaU, Gerson C. KroizU, Carlos A. BarajasG, Matthias K. Gobbert, Paul Maggi, and Jerimy Polf. Use of Deep Learning to Classify Compton Camera Based Prompt Gamma Imaging for Proton Radiotherapy. Technical Report HPCF-2020-14, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2020. Reprint in PDF-format.
  11. Gerson C. KroizU, Jonathan N. BasalygaU, Uchendu UchenduU, Reetam MajumderG, Carlos A. BarajasG, Matthias K. Gobbert, Kel Markert, Amita Mehta, and Nagaraj K. Neerchal. Stochastic Precipitation Generation for the Potomac River Basin using Hidden Markov Models. Technical Report HPCF-2020-11, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2020. Reprint in PDF-format.
  12. Charan DuggiralaG, Jinglong SunG, and Matthias K. Gobbert. Strong Performance Studies for the 2-D and 3-D Poisson Equations on the Taki 2018 Cluster. Technical Report HPCF-2020-1, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2020. Reprint in PDF-format.
  13. Charlie BeckerG, Will D. MayfieldG, Sarah Y. MurphyG, Bin Wang, Carlos BarajasG, and Matthias K. Gobbert. An Approach to Tuning Hyperparameters in Parallel: A Performance Study using Climate Data. Technical Report HPCF-2019-13, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2019. Reprint in PDF-format.
  14. Reetam MajumderG, Redwan WalidG, Jianyu ZhengG, Carlos BarajasG, Pei GuoG, Chamara RajapaksheG, Aryya Gangopadhyay, Matthias K. Gobbert, Jianwu Wang, Zhibo Zhang, Kel Markert, Amita Mehta, and Nagaraj K. Neerchal. Assessing Water Budget Sensitivity to Precipitation Forcing Errors in Potomac River Basin using the VIC Hydrologic Model. Technical Report HPCF-2019-11, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2019. Reprint in PDF-format.
  15. Carlos BarajasG and Matthias K. Gobbert. Strong and Weak Scalability Studies for the 3-D Poisson Equation on the Taki 2018 Cluster. Technical Report number HPCF-2019-2, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2019. Reprint in PDF-format.
  16. Carlos BarajasG and Matthias K. Gobbert. Strong and Weak Scalability Studies for the 2-D Poisson Equation on the Taki 2018 Cluster. Technical Report number HPCF-2019-1, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2019. Reprint in PDF-format.
  17. Richard EbadiG, Carlos BarajasG, and Matthias K. Gobbert. Parallel Performance Studies for a 3-D Elliptic Test Problem on the 2018 Portion of the Taki Cluster. Technical Report number HPCF-2018-19, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2018. Reprint in PDF-format.
  18. Carlos BarajasG and Matthias K. Gobbert. Parallel Performance Studies for an Elliptic Test Problem on the 2018 Portion of the Taki Cluster. Technical Report number HPCF-2018-18, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2018. Reprint in PDF-format.
  19. Noah SienkiewiczG, Arjun PandyaG, Tim BrownG, Carlos BarajasG, and Matthias K. Gobbert. Numerical Methods for Parallel Simulation of Diffusive Pollutant Transport from a Point Source. Technical Report number HPCF-2018-11, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2018. Reprint in PDF-format.
  20. Kritesh AroraG, Carlos BarajasG, and Matthias K. Gobbert. Parallel Performance Studies for an Elliptic Test Problem on the Stampede2 Cluster and Comparison of Networks. Technical Report number HPCF-2018-10, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2018. Reprint in PDF-format.
  21. Johnlemuel CasilagU, James Della-GiustinaU, Elizabeth GregorioU, Aniebet JacobU, Carlos BarajasG, Matthias K. Gobbert, Dennis S. Mackin, and Jerimy Polf. Development of Fast Reconstruction Techniques for Prompt Gamma Imaging During Proton Radiotherapy. Technical Report number HPCF-2017-16, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2017. Reprint in PDF-format.
  22. Kristen DeetzU, Nygel FosterU, Darius LeftwichU, Chad MeyerU, Shalin PatelU, Carlos BarajasG, Matthias K. Gobbert, and Zana Coulibaly. Developing the Coupling of the Mechanical to the Electrical and Calcium Systems in a Heart Cell. Technical Report number HPCF-2017-15, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2017. Reprint in PDF-format.
  23. Sai K. PopuriG and Matthias K. Gobbert. A Comparative Evaluation of Matlab, Octave, R, and Julia on Maya. Technical Report number HPCF-2017-3, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2017. Reprint in PDF-format.
  24. Lai WangG, Meilin Yu, and Matthias K. Gobbert. A Parallel Performance Study of the High-order Compact Direct Flux Reconstruction Method for Conservation Laws on Maya Cluster. Technical Report number HPCF-2017-1, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2017. Reprint in PDF-format.
  25. Sergio Garcia TapiaU, Rebecca HsuU, Alyssa HuU, Darren Stevens IIU, Jonathan S. GrafG, Matthias K. Gobbert, and Tyler Simon. Applications of Tensor Decompositions. Technical Report number HPCF-2016-17, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2016. Reprint in PDF-format.
  26. Ishmail A. JabbieU, George OwenU, Benjamin WhiteleyU, Jonathan S. GrafG, Matthias K. Gobbert, and Samuel Khuvis. Performance Comparison of a Two-Dimensional Elliptic Test Problem on Intel Xeon Phis. Technical Report number HPCF-2016-16, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2016. Reprint in PDF-format.
  27. Kallista AngeloffU, Carlos BarajasU, Alexander D. MiddletonU, Uchenna OsiaU, Jonathan S. GrafG, Matthias K. Gobbert, and Zana Coulibaly. Modeling the Links between the Chemical, Electrical, and Contractile Calcium Dynamics in a Heart Cell. Technical Report number HPCF-2016-15, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2016. Reprint in PDF-format.
  28. Wesley CollinsU, Daniel T. MartinezU, Michael MonaghanU, Alexey A. MunishkinU, Ari Rapkin BlenkhornG, Jonathan S. GrafG, Samuel KhuvisG, Matthias K. Gobbert, and John C. Linford. Comparison of Performance Analysis Tools for Parallel Programs Applied to CombBLAS. Technical Report number HPCF-2015-28, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2015. Reprint in PDF-format.
  29. Fernando X. Avila-SotoU, Alec N. BeriU, Eric ValenzuelaU, Abenezer WudenheU, Ari Rapkin BlenkhornG, Jonathan S. GrafG, Samuel KhuvisG, Matthias K. Gobbert, and Jerimy Polf. Parallelization for Fast Image Reconstruction using the Stochastic Origin Ensemble Method for Proton Beam Therapy. Technical Report number HPCF-2015-27, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2015. Reprint in PDF-format.
  30. Changling HuangU, Christopher C. LowmanU, Brandon E. OsborneU, Gabrielle M. SalibU, Ari Rapkin BlenkhornG, Jonathan S. GrafG, Samuel KhuvisG, Matthias K. Gobbert, Tylor Simon, and David J. Mountain. Performance Studies of the Blossom V Algorithm. Technical Report number HPCF-2015-26, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2015. Reprint in PDF-format.
  31. Kourosh M. KalayehG, Jonathan S. GrafG, and Matthias K. Gobbert. FEM Convergence Studies for 2-D and 3-D Elliptic PDEs with Smooth and Non-Smooth Source Terms in COMSOL 5.1. Technical Report number HPCF-2015-19, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2015. Reprint in PDF-format.
  32. Xuan HuangG and Matthias K. Gobbert. Parallel Performance Studies for a Three-Species Application Problem on the Cluster maya. Technical Report number HPCF-2015-8, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2015. Reprint in PDF-format.
  33. Jonathan GrafG and Matthias K. Gobbert. Parallel Performance Studies for a Parabolic Test Problem on the Cluster maya. Technical Report number HPCF-2015-7, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2015. Reprint in PDF-format.
  34. Samuel KhuvisG and Matthias K. Gobbert. Parallel Performance Studies for an Elliptic Test Problem on the Cluster maya. Technical Report number HPCF-2015-6, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2015. Reprint in PDF-format.
  35. Oluwapelumi AdenikinjuU, Julian GilyardU, Joshua MasseyU, Thomas StittU, Jonathan GrafG, Xuan HuangG, Samuel KhuvisG, Matthias K. Gobbert, Yu WangG, and Marc Olano. Real Time Global Illumination Solutions to the Radiosity Algorithm using Hybrid CPU/GPU Nodes. Technical Report number HPCF-2014-15, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2014. Reprint in PDF-format.
  36. Adam CunninghamU, Gerald PaytonU, Jack SlettebakU, Jordi Wolfson-PouU, Jonathan GrafG, Xuan HuangG, Samuel KhuvisG, Matthias K. Gobbert, Thomas Salter, and David J. Mountain. Pushing the Limits of the Maya Cluster. Technical Report number HPCF-2014-14, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2014. Reprint in PDF-format.
  37. Sarah SwatskiG, Samuel KhuvisG, and Matthias K. Gobbert. A Comparison of Solving the Poisson Equation Using Several Numerical Methods in Matlab and Octave on the Cluster maya. Technical Report number HPCF-2014-10, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2014. Reprint in PDF-format.
  38. David StonkoG, Samuel KhuvisG, and Matthias K. Gobbert. Numerical Methods to Solve 2-D and 3-D Elliptic Partial Differential Equations Using Matlab on the Cluster maya. Technical Report number HPCF-2014-9, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2014. Reprint in PDF-format.
  39. Xuan HuangG and Matthias K. Gobbert. Parallel Performance Studies for a Three-Species Application Problem on maya 2013. Technical Report number HPCF-2014-8, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2014. Reprint in PDF-format.
  40. Jonathan GrafG and Matthias K. Gobbert. Parallel Performance Studies for a Parabolic Test Problem on maya 2013. Technical Report number HPCF-2014-7, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2014. Reprint in PDF-format.
  41. Samuel KhuvisG and Matthias K. Gobbert. Parallel Performance Studies for an Elliptic Test Problem on maya 2013. Technical Report number HPCF-2014-6, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2014. Reprint in PDF-format.
  42. Gemma GearhartU, Shuai JiangU, Thomas J. MayU, Jane PanU, Samuel KhuvisG, Matthias K. Gobbert, Bradford E. Peercy, and Arthur Sherman. Investigating Oscillation Loss in Computational Islets. Technical Report number HPCF-2013-14, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2013. Reprint in PDF-format.
  43. Nil MistryU, Jordan RamseyU, Benjamin WileyU, Jackie YanchuckU, Xuan HuangG, Matthias K. Gobbert, Christopher Mineo, and David Mountain. Contention of Communications in Switched Networks with Applications to Parallel Sorting. Technical Report number HPCF-2013-13, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2013. Reprint in PDF-format.
  44. Nil MistryU, Jordan RamseyU, Benjamin WileyU, Jackie YanchuckU, Xuan HuangG, Andrew RaimG, Matthias K. Gobbert, Nagaraj K. Neerchal, and Philip J. Farabaugh. Clustering of Multidimensional Data Sets with Applications to Spatial Distributions of Ribosomal Proteins. Technical Report number HPCF-2013-10, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2013. Reprint in PDF-format.
  45. Sai K. PopuriG, Andrew M. RaimG, Nagaraj K. Neerchal, and Matthias K. Gobbert. An Implementation of Binomial Method of Option Pricing using Parallel Computing. Technical Report number HPCF-2013-1, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2013. Reprint in PDF-format.
  46. Ecaterina ComanU, Matthew W. BrewsterU, Sai K. PopuriG, Andrew M. RaimG, and Matthias K. Gobbert. A Comparative Evaluation of Matlab, Octave, FreeMat, Scilab, R, and IDL on tara. Technical Report number HPCF-2012-15, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2012. Reprint in PDF-format.
  47. Annie CastnerU, Jenny LouthanU, Edwardo RiveraU, Christian WeigandtU, Jonathan S. McHenryG, Nagaraj K. Neerchal, Matthias K. Gobbert, and Michael Dillon. Simulation of a University as a Dynamical System. Technical Report number HPCF-2012-13, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2012. Reprint in PDF-format.
  48. Jordan B. AngelU, Amy FloresU, Justine HeritageU, Nathan WardripU, Andrew M. RaimG, Matthias K. Gobbert, Richard C. Murphy, and David J. Mountain. Graph 500 Performance on a Distributed-Memory Cluster. Technical Report number HPCF-2012-11, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2012. Reprint in PDF-format.
  49. Sai K. PopuriG, Andrew M. RaimG, Matthew W. BrewsterU, and Matthias K. Gobbert. A Comparative Evaluation of Matlab, Octave, FreeMat, Scilab, and R on Tara. Technical Report number HPCF-2012-7, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2012. Reprint in PDF-format.
  50. Yu WangG, Marc Olano, Matthias K. Gobbert, and Wesley GriffinG. A GPU Memory System Comparison for an Elliptic Test Problem. Technical Report number HPCF-2012-1, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2012. Reprint in PDF-format.
  51. Richard AdjogahU, Randal MckissackU, Ekene SibeuduU, Andrew M. RaimG, Matthias K. Gobbert, and Loring Craymer. Intel Concurrent Collections as a Method for Parallel Programming. Technical Report number HPCF-2011-14, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2011. Reprint in PDF-format.
  52. Andrew CoatesU, Alexey IlchenkoU, Matthias K. Gobbert, Nagaraj K. Neerchal, Patrick O'NeillG, and Ivan Erill. Optimization of Computations Used in Information Theory Applied to Base Pair Analysis. Technical Report number HPCF-2011-13, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2011. Reprint in PDF-format.
  53. Matthew BrewsterU and Matthias K. Gobbert. A Comparative Evaluation of Matlab, Octave, FreeMat, and Scilab on Tara. Technical Report number HPCF-2011-10, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2011. Reprint in PDF-format.
  54. Joseph CornishU, Robert ForderU, Ivan Erill, and Matthias K. Gobbert. Simulation of the Evolution of Information Content in Transcription Factor Binding Sites Using a Parallelized Genetic Algorithm. Technical Report number HPCF-2011-9, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2011. Reprint in PDF-format.
  55. Sidafa CondeU, Teresa LebairU, Christopher RaastadU, Virginia SmithU, Kyle SternG, David TrottG, Matthias K. Gobbert, Bradford E. Peercy, and Arthur Sherman. Enabling Physiologically Representative Simulations of Pancreatic Beta Cells. Technical Report number HPCF-2010-21, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2010. Reprint in PDF-format.
  56. David W. TrottG and Matthias K. Gobbert. Parallel Performance Studies for a Three-Species Application Problem on the Cluster tara, Technical Report number HPCF-2010-11, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2010. Reprint in PDF-format.
  57. David W. TrottG and Matthias K. Gobbert. Finite Element Convergence Studies using COMSOL 4.0a and LiveLink for MATLAB. Technical Report number HPCF-2010-8, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2010. Reprint in PDF-format.
  58. Neeraj SharmaG and Matthias K. Gobbert. A Comparative Evaluation of Matlab, Octave, FreeMat, and Scilab for Research and Teaching. Technical Report number HPCF-2010-7, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2010. Reprint in PDF-format.
  59. Hafez TariG and Matthias K. Gobbert. A Comparative Study of the Parallel Performance of the Blocking and Non-Blocking MPI Communication Commands on an Elliptic Test Problem on the Cluster tara. Technical Report number HPCF-2010-6, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2010. Reprint in PDF-format.
  60. Michael MuscedereG, Andrew M. RaimG, and Matthias K. Gobbert. Parallel Performance Studies for a Parabolic Test Problem on the Cluster tara. Technical Report number HPCF-2010-4, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2010. Reprint in PDF-format.
  61. Andrew M. RaimG and Matthias K. Gobbert. Parallel Performance Studies for an Elliptic Test Problem on the Cluster tara. Technical Report number HPCF-2010-2, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2010. Reprint in PDF-format.
  62. Andrew M. RaimG and Matthias K. Gobbert. Parallel Performance Studies for a Maximum Likelihood Estimation Problem Using TAO. Technical Report number HPCF-2009-8, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2009. Reprint in PDF-format.
  63. Aaron ChurchillG, Matthias K. Gobbert, and Thomas I. Seidman. Efficient Computation for a Reaction-Diffusion System with a Fast Reaction in Two Spatial Dimensions Using COMSOL Multiphysics. Technical Report number HPCF-2009-7, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2009. Reprint in PDF-format.
  64. Zana CoulibalyU, Michael MuscedereG, Matthias K. Gobbert, and Bradford E. Peercy. Long-Time Simulation of Calcium Waves in a Heart Cell to Study the Effects of Calcium Release Flux Density and of Coefficients in the Pump and Leak Mechanisms on Self-Organizing Wave Behavior. Technical Report number HPCF-2009-6, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2009. Reprint in PDF-format.
  65. Guan WangG and Matthias K. Gobbert. Performance Comparison between Blocking and Non-Blocking Communications for a Three-Dimensional Poisson Problem. Technical Report number HPCF-2009-5, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2009. Reprint in PDF-format.
  66. Noemi PetraG and Matthias K. Gobbert. Performance Studies with COMSOL Multiphysics via Scripting and Batch Processing. Technical Report number HPCF-2009-4, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2009. Reprint in PDF-format.
  67. Guan WangG, Aaron ChurchillG, Matthias K. Gobbert, and Thomas I. Seidman. Efficient Computation for a Reaction-Diffusion System with Fast Reaction with Continuous and Discontinuous Initial Data Using COMSOL Multiphysics. Technical Report number HPCF-2009-3, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2009. Reprint in PDF-format.
  68. Amanda K. GassmanG and Matthias K. Gobbert. Solving a Two-Dimensional Elliptic Model Problem with the Conjugate Gradient Method Using Matrix-Free SSOR Preconditioning in Matlab. Technical Report number HPCF-2009-2, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2009. Reprint in PDF-format.
  69. Neeraj SharmaG and Matthias K. Gobbert. Performance Studies for Multithreading in Matlab with Usage Instructions on hpc. Technical Report number HPCF-2009-1, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2009. Reprint in PDF-format.
  70. Robin Blasberg and Matthias K. Gobbert. MVAPICH2 vs. OpenMPI for a Clustering Algorithm. Technical Report number HPCF-2008-7, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2008. Reprint in PDF-format.
  71. Robin Blasberg and Matthias K. Gobbert. Parallel Performance Studies for a Clustering Algorithm. Technical Report number HPCF-2008-5, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2008. Reprint in PDF-format.
  72. Shiming YangG and Matthias K. Gobbert. Convergence Order Studies for Elliptic Test Problems with COMSOL Multiphysics. Technical Report number HPCF-2008-4, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2008. Reprint in PDF-format.
  73. Michael J. ReidU and Matthias K. Gobbert. Parallel Performance Studies for a Hyperbolic Test Problem. Technical Report number HPCF-2008-3, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2008. Reprint in PDF-format.
  74. Michael MuscedereG and Matthias K. Gobbert. Parallel Performance Studies for a Parabolic Test Problem. Technical Report number HPCF-2008-2, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2008. Reprint in PDF-format.
  75. Matthias K. Gobbert. Parallel Performance Studies for an Elliptic Test Problem. Technical Report number HPCF-2008-1, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2008. Reprint in PDF-format.
  76. Yushu YangG, Michael MuscedereG, and Matthias K. Gobbert. Numerical Studies of the Asymptotic Behavior of a Reaction-Diffusion System with a Fast Reaction. Technical Report number TR2008-4, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2008. Reprint in PDF-format.
  77. Matthias K. Gobbert and Nagaraj K. Neerchal. Preparing Graduate Students for Interdisciplinary Careers. Computing in Science and Engineering (CiSE), Education Department, vol. 10, no. 1, pp. 93-95, January/February 2008. Link to the magazine's webpage for this article and reprint in PDF-format.
  78. Alen AgheksanterianG and Matthias K. Gobbert. Modeling the Spread of Epidemic Cholera: an Age-Structured Model. Technical Report number TR2007-9, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2007. Reprint in PDF-format.
  79. Shiming YangG and Matthias K. Gobbert. The Optimal Relaxation Parameter for the SOR Method Applied to a Classical Model Problem. Technical Report number TR2007-6, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2007. Reprint in PDF-format.
  80. Matthias K. Gobbert, Kathleen A. Hoffman, and Jinglai Shen. Advances in Control of Partial Differential Equations in Honor of Thomas I. Seidman. IEEE Control Systems Magazine, vol. 27, no. 2, pp. 92-93, April 2007. Link to IEEE's Xplore site for this article and reprint in PDF-format.
  81. Ana Maria SoaneG, Matthias K. Gobbert, and Thomas I. Seidman. Design of an effective numerical method for a reaction-diffusion system with internal and transient layers. Technical Report number 2006, Institute for Mathematics and its Applications (IMA), University of Minnesota, 2004. Follow the link for "Prepint/Publications" at the IMA website.
  82. Kevin P. AllenU and Matthias K. Gobbert. A Matrix-Free Conjugate Gradient Method for Cluster Computing. Technical Report, University of Maryland, Baltimore County, 2003.
  83. Matthias K. Gobbert, Samuel G. WebsterG, Jean-François Remacle, and Timothy S. Cale. A Spectral Galerkin Ansatz for the Deterministic Solution of the Boltzmann Equation on Irregular Domains. Technical Report, University of Maryland, Baltimore County, 2002.
  84. Alexander L. HanhartG, Matthias K. Gobbert, and Leighton T. Izu. Coarse-Grained Parallel Solution for a System of Reaction Diffusion Equations. Technical Report, University of Maryland, Baltimore County, 2002.
  85. Steven C. FosterU, Matthias K. Gobbert, and Jean-François Remacle. Performance Studies on the Discontinuous Galerkin Method for Solving the Scalar Transport Equation. Technical Report, University of Maryland, Baltimore County, 2002.
  86. Matthias K. Gobbert. Numerical Simulation of Real-World Engineering Applications. Development and Perspectives, no. 1, pp. 65-74, Peust & Gutschmidt Verlag, Göttingen (Germany), 2001.
  87. Matthias K. Gobbert. A Homogenization Technique for the Development of Mesoscopic Scale Models for Chemical Vapor Deposition. Dissertation Summaries in Mathematics, vol. 1, no. 1-2, pp. 299-306, Fall 1996.
  88. Matthias K. Gobbert. A Homogenization Technique for the Development of Mesoscopic Scale Models for Chemical Vapor Deposition. Ph.D. thesis, Arizona State University, May 1996.
  89. Matthias K. Gobbert. Robertson's Example for Stiff Differential Equations. Technical Report, Arizona State University, 1996.

Student Publications

  1. Nithya NavarathnaU. The Power of GPUs in Machine Learning to Improve Proton Beam Therapy for Cancer Treatment. UMBC Review: Journal of Undergraduate Research, vol. 24, pp. 51-69, 2023. Link to this article in the journal and reprint in PDF-format.
  2. Gerson C. KroizU, Alexandre Bardakoff, Timothy Blattner, and Walid Keyrouz. Study of Exploiting Coarse-Grained Parallelism in Block-Oriented Numerical Linear Algebra Routines. Proceedings in Applied Mathematics and Mechanics (PAMM), vol. 20, no. 1, 2 pages, 2020. Link to this article at the Wiley Online Library and reprint in PDF-format.
  3. Ishmail A. JabbieU, George OwenU, and Benjamin WhiteleyU. Performance Comparison of Intel Xeon Phi Knights Landing. SIAM Undergraduate Research Online (SIURO), vol. 10, 2017. Link to PDF at SIURO and reprint in PDF-format.
  4. Jack SlettebakU. Pushing the Limits of the Maya Supercomputer with the HPCG Benchmark. UMBC Review: Journal of Undergraduate Research, vol. 17, pp. 162-175, 2016.
  5. Kourosh M. KalayehG. Finite Element Convergence Studies of a Time-Dependent Test Problem Using COMSOL 5.1. Technical Report number HPCF-2015-30, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2015.
  6. Oluwapelumi AdenikinjuU, Julian GilyardU, Joshua MasseyU, Thomas StittU. Concurrent Solutions to Linear Systems using Hybrid CPU/GPU Nodes. SIAM Undergraduate Research Online (SIURO), vol. 8, 2015. Link to PDF at SIURO and reprint in PDF-format.
  7. Kourosh M. KalayehG. Parallel Performance Studies for an Elliptic Test Problem on the Cluster maya 2013: Using 1-D and 2-D Domain Subdivisions. Technical Report number HPCF-2014-25, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2014. Reprint in PDF-format.
  8. Sarah SwatskiG. Investigating the Use of pMatlab to Solve the Poisson Equation on the Cluster maya. Technical Report number HPCF-2014-24, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2014. Reprint in PDF-format.
  9. Jane PanU, Gemma GearhartU, Shuai JiangU, and Thomas J. MayU. Loss of Metabolic Oscillations in a Multicellular Computational Islet of the Pancreas. UMBC Review: Journal of Undergraduate Research, vol. 15, pp. 31-53, 2014.
  10. Rosemary K. LeU, Christopher V. RackauckasU, Anne S. RossU, and Nehemias UlloaU. Assessment of Statistical Methods for Water Quality Monitoring in Maryland's Tidal Waterways. SIAM Undergraduate Research Online (SIURO), vol. 6, 2013. Link to PDF at SIURO and reprint in PDF-format.
  11. Matthew BrewsterU. Alternatives to the Mathematical Software Package MATLAB in Research and Education. UMBC Review: Journal of Undergraduate Research, vol. 14, pp. 50-65, 2013. Preprint in PDF-format.
  12. Jonas SchäferG. Performance Studies for the Two-Dimensional Poisson Problem Discretized by Finite Differences. Technical Report number HPCF-2012-6, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2012.
  13. Matthew W. BrewsterU. Study of Free Alternative Numerical Computation Packages. SIAM Undergraduate Research Online (SIURO), vol. 5, 2012. Link to PDF at SIURO and preprint in PDF-format.
  14. Michael CurtisU. A Collaborative Filtering Model: Statistical Properties of Alternating Least Squares. UMBC Review: Journal of Undergraduate Research, vol. 13, pp. 10-21, 2012.
  15. Robert ForderU. A Parallel Simulation of the Evolution of Transcription Factor Binding Sites. Technical Report number HPCF-2011-1, UMBC High Performance Computing Facility, University of Maryland, Baltimore County, 2011. Reprint in PDF-format.
  16. Michael J. ReidU. Parallel Performance Studies for a Numerical Simulator of Atomic Layer Deposition. UMBC Review: Journal of Undergraduate Research, vol. 11, pp. 30-41, 2010. Preprint in PDF-format.
  17. Kevin P. AllenU. Efficient Parallel Computing for Solving Linear Systems of Equations. UMBC Review: Journal of Undergraduate Research and Creative Works, vol. 5, pp. 8-17, 2004.
  18. Steven C. FosterU. Performance Studies for the Discontinuous Galerkin Method Applied to the Scalar Transport Equation. UMBC Review: Journal of Undergraduate Research and Creative Works, vol. 4, pp. 36-47, 2003.

Student Theses Supervised

  1. Charan DuggiralaG. Distributed GPU Computing for Deep Learning in Proton Beam Therapy for Cancer Treatment. M.S. Thesis, Department of Information Systems, University of Maryland, Baltimore County, 2023.
  2. Garima KumariG. Distributed Deep Learning Techniques for Remote Sensing Applications. M.S. Thesis, Department of Information Systems, University of Maryland, Baltimore County, 2023.
  3. Michelle RamsahoyeU. Exploring Deep Fully Connected Residual Neural Networks for Initial Energy Estimations of Compton Camera Based Prompt Gamma Imaging Data for Proton Radiotherapy. Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2022. Reprint in PDF-format.
  4. Carlos A. BarajasG. Neural Networks for the Sanitization of Compton Camera Based Prompt Gamma Imaging Data for Proton Radiotherapy. Ph.D. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2022.
  5. Gerson C. KroizU. A Comparison of Stochastic Precipitation Generation Models for the Potomac River Basin. Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2020.
  6. Jonathan N. BasalygaU. Parallel Hyperparameter Tuning of Accuracy for Deep Learning based Tornado Predictions. Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2020.
  7. Carlos A. BarajasG. An Approach to Tuning Hyperparameters in Parallel: A Performance Study Using Climate Data. M.S. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2019.
  8. Jonathan S. GrafG. Parallel Performance of Numerical Simulations for Applied Partial Differential Equation Models on the Intel Xeon Phi Knights Landing Processor. Ph.D. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2017.
  9. Ryan D. DayG. Parallel Performance Studies for a Linear Parabolic Test Problem Using the Intel Xeon Phi. M.S. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2016.
  10. Samuel KhuvisG. Porting and Tuning Numerical Kernels in Real-World Applications to Many-Core Intel Xeon Phi Accelerators. Ph.D. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2016.
  11. Jack SlettebakU. The HPCG Benchmark for Cluster Computing. Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2015.
  12. Xuan HuangG. An MPI-CUDA Implementation of a Model for Calcium Induced Calcium Release in a Three-Dimensional Heart Cell on a Hybrid CPU/GPU Cluster. Ph.D. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2015.
  13. Jonathan McHenryG. Parallel Regularized Maximum Likelihood Estimation for Proportional Odds Models. Ph.D. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2014.
  14. Matthew W. BrewsterU. The Influence of Stochastic Parameters on Calcium Waves in a Heart Cell. Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2014.
  15. Samuel KhuvisG. Efficiency Improvements in Numerical Methods for Studying Connectivity in a Model of a Pancreatic Islet of Heterogeneous Beta Cells. M.S. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2013.
  16. Randal MckissackU. Cluster Computing using Intel Concurrent Collections. Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2012.
  17. Ecaterina ComanU. IDL: A Possible Alternative to Matlab? Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2012.
  18. Robert ForderU. Simulating the Evolution of Transcriptional Regulatory Motifs. Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2012.
  19. Neeraj SharmaG. A Comparative Study of Several Numerical Computational Packages. M.S. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2010.
  20. Peter HinkeyU. Improvement of Numerically Integrated Satellite Orbits by Inclusion of Temporal Variations in Earth's Gravitational Field from GRACE. Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2008.
  21. Michael J. ReidU. Comparison of Parallel Performance between MVAPICH2 and OpenMPI Applied to a Hyperbolic Test Problem. Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2008.
  22. Zhibin SunG. Geomagnetic Data Assimilation Using Ensemble Methods to Estimate Forecast Error Covariance. Ph.D. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2007.
  23. Samuel G. WebsterG. Stability and Convergence of a Spectral Galerkin Method for the Linear Boltzmann Equation. Ph.D. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2004.
  24. Steven C. FosterU. Performance Studies for the Discontinuous Galerkin Method Applied to the Scalar Transport Equation. Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2003.
  25. Kevin P. AllenU. A Parallel Matrix-Free Implementation of the Conjugate Gradient Method for the Poisson Equation. Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2003.
  26. Alexander L. HanhartG. Coarse-Grained Parallel Solution of a Three-Dimensional Model for Calcium Concentration in Human Heart Cells. M.S. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County, 2002.
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