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Instructor: C. Allen Bush - Room 204 Chemistry ext. 2506

Instructions for viewing 3-dimensional Kinemages used in class for peptide and protein conformation.

See Brandon and Tooze, Chapter 1-5.

1. Download the Kinemage program for PC, mage_5_4.exe

Click here

Also check the Kinemage website for further information.

2.

Download the data files containing the individual exercises. These are plain text (ascii) files which may be saved on your computer. The program, mage_5_4.exe, can read them.

• Chapter 1 basics

  Demo #6 Illustrates the definition of dihedral angle in peptides

  Demo #1 Illustrates the important dihedral angles for phenylalanine peptides.

• Demo5_4 Demo \# 6 Illustrates an alpha helical segment of a protein

  Structures of the common amino acids

• Chapter 2 Kinemage files

• Chapter 3 Kinemage files

• Link to Garrett and Grisham's page with more Kinemages illustrating protein structure

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